JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC16A10_chr6_111082503_111236194	0/0	t0078	9224	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0079	9225	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0080	9225	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0081	9216	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0082	9226	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0083	9225	1	0	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0084	9223	1	0	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0085	9224	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0086	9224	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0087	9210	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0088	9212	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0089	9218	1	0	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0090	9220	1	0	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0091	9218	1	0	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0092	9218	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0093	9220	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0094	9220	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0095	9210	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0096	9211	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0097	9220	1	0	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0098	9223	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	t0099	9242	1	0	0	1	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A11_chr17_7036621_7049092	1/1	t0001	383	368	85	64	157	14	46	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	t0002	383	34	1	16	17	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	t0003	383	12	12	0	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	t0004	383	5	0	0	5	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	t0005	383	1	0	0	1	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A12_chr10_89425299_89540594	0/0	t0001	3104	76	6	10	54	1	5	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/1	t0002	3103	72	26	11	26	2	6	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	1/0	t0003	3105	69	6	25	24	4	9	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0004	3105	20	18	2	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0005	3104	16	3	4	6	1	2	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0006	3104	9	8	1	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0007	3104	6	6	0	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0008	3103	6	0	0	6	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0009	3104	2	2	0	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0010	3105	2	0	1	0	0	1	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0011	3104	2	2	0	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0012	3104	2	2	0	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0013	3103	1	0	0	0	0	1	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0014	3104	1	1	0	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0015	3104	1	1	0	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0016	3104	1	0	1	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0017	3105	1	0	0	1	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0018	3104	1	1	0	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0019	3104	1	1	0	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0020	3104	1	1	0	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0021	3104	1	0	0	1	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	t0022	3105	1	0	1	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A13_chr17_7031015_7045117	0/1	t0001	524	218	16	46	126	11	18	copy fasta	SLC16A13	chr17	7031015	7045117