JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC16A13_chr17_7031015_7045117	1/0	t0002	524	204	83	37	52	5	26	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	t0003	524	1	0	1	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	t0004	524	1	1	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	t0005	524	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	t0006	524	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A14_chr2_230029982_230073924	1/1	t0001	2783	211	25	28	117	7	32	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0002	2783	92	43	23	13	7	6	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0003	2783	85	11	15	47	4	8	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0004	2783	9	9	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0005	2783	3	3	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0006	2783	3	0	3	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0007	2783	2	2	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0008	2783	2	0	2	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0009	2783	2	0	2	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0010	2783	2	1	1	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0011	2783	1	0	1	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0012	2783	1	1	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0013	2783	1	1	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0014	2783	1	0	1	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0015	2783	1	0	1	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0016	2783	1	0	1	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0017	2783	1	1	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0018	2783	1	0	0	1	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	t0019	2783	1	1	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A1_chr1_112906847_112961196	0/1	t0001	2251	149	17	26	88	1	16	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	1/0	t0002	2251	109	6	27	60	4	11	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0003	2251	64	51	9	0	2	2	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0004	2251	7	7	0	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0005	2251	5	0	2	2	0	1	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0006	2251	2	0	1	0	1	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0007	2251	1	0	0	0	0	1	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0008	2251	1	0	0	0	0	1	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0009	2251	1	0	0	1	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0010	2251	1	0	0	1	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0011	2251	1	1	0	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0012	2251	1	1	0	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0013	2251	1	1	0	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0014	2251	1	0	0	1	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0015	2251	1	0	0	1	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	t0016	2251	1	0	1	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A2_chrX_74416493_74538916	1/1	t0001	2509	201	46	46	76	6	25	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0002	2510	13	8	2	0	2	1	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0003	2509	4	4	0	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0004	2509	2	0	0	0	1	1	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0005	2509	2	2	0	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0006	2509	2	2	0	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0007	2515	2	2	0	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0008	2509	1	0	0	1	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0009	2509	1	1	0	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0010	2507	1	1	0	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916