JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC16A2_chrX_74416493_74538916	0/0	t0011	2508	1	0	0	1	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0012	2509	1	1	0	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0013	2509	1	0	0	0	0	1	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0014	2510	1	1	0	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0015	2509	1	1	0	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	t0016	2509	1	0	1	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A3_chr17_82224042_82245086	0/1	t0001	1192	278	47	53	130	13	34	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	1/0	t0002	1202	67	16	20	14	1	15	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0003	1192	19	0	0	19	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0004	1202	8	7	1	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0005	1192	7	6	1	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0006	1192	7	4	3	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0007	1192	5	5	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0008	1192	3	3	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0009	1202	2	0	2	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0010	1192	2	2	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0011	1192	2	0	0	2	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0012	1192	2	2	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0013	1192	1	0	1	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0014	1192	1	1	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0015	1202	1	0	1	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0016	1202	1	1	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0017	1192	1	1	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0018	1192	1	0	0	0	0	1	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0019	1192	1	1	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	t0020	1180	1	0	0	1	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A4_chr1_110357857_110396026	1/1	t0001	1104	268	72	50	119	5	20	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0002	1104	75	0	9	52	4	10	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0003	1105	54	8	12	21	3	10	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0004	1104	10	0	1	9	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0005	1105	6	5	1	0	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0006	1104	3	2	1	0	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0007	1104	2	2	0	0	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0008	1104	2	2	0	0	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0009	1105	2	0	0	1	0	1	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0010	1104	1	1	0	0	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0011	1104	1	0	0	1	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0012	1104	1	0	0	1	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0013	1104	1	0	0	1	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0014	1104	1	0	0	1	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0015	1104	1	0	0	1	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0016	1105	1	0	0	1	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0017	1104	1	1	0	0	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0018	1104	1	1	0	0	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	t0019	1104	1	0	0	0	0	1	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A5_chr17_75082954_75111162	1/1	t0001	423	304	81	51	132	11	27	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	t0002	423	96	12	27	28	7	22	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	t0003	423	12	0	0	12	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	t0004	423	2	0	2	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	t0005	423	1	0	0	0	0	1	copy fasta	SLC16A5	chr17	75082954	75111162