JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC16A9_chr10_59645764_59714850	0/0	t0009	2423	8	0	2	4	0	2	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0010	2406	8	7	1	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0011	2423	7	6	1	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0012	2417	6	0	3	0	2	1	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0013	2418	6	6	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0014	2419	5	0	0	5	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0015	2423	4	0	3	0	0	1	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0016	2421	3	1	2	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0017	2420	3	0	2	0	0	1	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0018	2419	3	3	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0019	2425	2	2	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0020	2417	2	0	0	2	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0021	2424	2	0	0	0	0	2	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0022	2420	2	2	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0023	2424	2	1	1	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0024	2422	2	0	0	2	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0025	2421	2	0	0	2	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0026	2417	2	1	0	1	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0027	2423	2	0	1	0	1	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0028	2426	2	2	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0029	2423	1	0	0	0	0	1	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0030	2418	1	1	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0031	2420	1	0	1	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0032	2406	1	1	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0033	2421	1	0	0	1	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0034	2417	1	0	0	1	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0035	2354	1	1	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0036	2421	1	0	0	0	0	1	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0037	2421	1	0	0	1	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0038	2423	1	0	0	0	0	1	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0039	2425	1	0	0	1	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0040	2417	1	1	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0041	2420	1	0	0	0	1	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0042	2418	1	0	0	0	0	1	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0043	2421	1	0	0	1	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	t0044	2419	1	0	0	1	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC17A1_chr6_25777915_25837052	0/1	t0001	416	178	47	30	65	9	26	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	1/0	t0002	416	161	34	37	73	4	12	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	t0003	416	6	6	0	0	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	t0004	416	2	1	0	0	1	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	t0005	416	1	0	1	0	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A2_chr6_25907754_25935691	1/0	t0001	1062	185	67	31	53	8	25	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/1	t0002	1062	160	14	28	93	5	19	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	t0003	1059	17	15	2	0	0	0	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	t0004	1062	12	0	0	12	0	0	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	t0005	1062	3	0	2	0	1	0	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	t0006	1062	2	0	2	0	0	0	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	t0007	1062	1	0	1	0	0	0	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A3_chr6_25839856_25879243	0/1	t0001	555	275	83	46	117	6	22	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	1/0	t0002	556	88	11	18	35	6	17	copy fasta	SLC17A3	chr6	25839856	25879243