Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL2L11_chr2_111115914_111173444	0/0	t0049	4492	1	0	0	0	1	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0050	4499	1	0	1	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0051	4499	1	0	1	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0052	4499	1	1	0	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0053	4499	1	0	0	1	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0054	4502	1	0	1	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0055	4517	1	1	0	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0056	4513	1	1	0	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0057	4521	1	0	0	0	1	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0058	4522	1	1	0	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0059	4533	1	0	0	0	0	1	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0060	4531	1	1	0	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0061	4539	1	0	1	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0062	4542	1	0	1	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0063	4537	1	0	0	0	1	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0064	4551	1	0	0	0	0	1	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0065	4520	1	1	0	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0066	4499	1	0	0	0	0	1	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0067	4498	1	1	0	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0068	4528	1	1	0	0	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0069	4502	1	0	0	1	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L11_chr2_111115914_111173444	0/0	t0070	4499	1	0	0	1	0	0	copy fasta	BCL2L11	chr2	111115914	111173444
BCL2L12_chr19_49660933_49678916	1/1	t0001	312	334	71	69	143	11	38	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L12_chr19_49660933_49678916	0/0	t0002	312	26	1	3	13	1	8	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L12_chr19_49660933_49678916	0/0	t0003	312	19	15	4	0	0	0	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L12_chr19_49660933_49678916	0/0	t0004	312	1	1	0	0	0	0	copy fasta	BCL2L12	chr19	49660933	49678916
BCL2L13_chr22_17633757_17735855	1/0	t0001	3502	46	6	17	9	2	11	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/1	t0002	3501	43	2	15	14	3	8	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0003	3503	35	13	0	21	0	1	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0004	3502	21	1	3	11	2	4	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0005	3502	19	7	2	8	0	2	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0006	3502	17	4	4	2	3	4	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0007	3503	12	11	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0008	3503	8	4	1	2	0	1	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0009	3508	6	2	4	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0010	3504	5	0	1	4	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0011	3503	5	0	1	4	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0012	3503	4	4	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0013	3502	4	0	0	4	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0014	3502	4	4	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0015	3502	3	0	3	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0016	3502	3	1	1	0	0	1	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0017	3503	3	3	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0018	3501	3	0	1	2	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0019	3503	3	3	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0020	3508	3	3	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0021	3503	3	3	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0022	3503	2	0	2	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0023	3503	2	0	0	2	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0024	3503	2	2	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855