JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC17A3_chr6_25839856_25879243	0/0	t0003	555	3	0	2	0	1	0	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	t0004	556	1	0	0	0	0	1	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	t0005	556	1	0	0	0	1	0	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A4_chr6_25749742_25786199	0/0	t0001	2084	117	6	25	73	4	9	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0002	2084	99	18	18	35	7	21	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	1/0	t0003	2088	37	27	6	1	1	1	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0004	2084	32	18	3	11	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0005	2084	25	2	0	22	0	1	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/1	t0006	2084	23	1	5	5	2	9	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0007	2084	10	9	1	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0008	2084	7	6	1	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0009	2084	4	2	2	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0010	2084	3	0	2	0	1	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0011	2084	2	0	1	0	1	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0012	2084	2	0	0	2	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0013	2084	1	1	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0014	2084	1	0	0	1	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0015	2084	1	1	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0016	2084	1	1	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	t0017	2084	1	0	0	0	0	1	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A5_chr6_73588379_73658992	1/0	t0001	1805	174	39	29	88	6	11	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	t0002	1805	51	23	7	18	0	3	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	t0003	1805	46	2	21	19	2	2	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/1	t0004	1805	43	16	10	6	4	6	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	t0005	1805	2	0	0	2	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	t0006	1805	2	0	0	2	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	t0007	1805	2	1	1	0	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	t0008	1805	1	1	0	0	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	t0009	1805	1	1	0	0	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	t0010	1805	1	0	0	1	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	t0011	1805	1	1	0	0	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A6_chr11_22333381_22384503	1/0	t0001	1917	195	47	28	83	6	30	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0002	1917	104	0	35	55	5	9	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0003	1918	39	1	0	37	0	1	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/1	t0004	1918	39	1	7	20	3	7	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0005	1918	19	18	1	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0006	1917	15	13	2	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0007	1918	8	0	0	8	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0008	1916	6	6	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0009	1917	5	5	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0010	1917	3	3	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0011	1918	3	0	0	3	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0012	1918	3	3	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0013	1917	2	0	1	0	1	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0014	1917	2	2	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0015	1917	1	0	0	1	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0016	1918	1	0	0	0	0	1	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0017	1917	1	1	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0018	1917	1	0	0	1	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0019	1917	1	0	1	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503