JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC17A6_chr11_22333381_22384503	0/0	t0020	1917	1	0	0	0	1	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	t0021	1917	1	0	1	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A7_chr19_49424401_49446527	0/1	t0001	1266	251	73	53	72	14	38	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0002	1266	135	9	23	90	2	11	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0003	1264	5	5	0	0	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0004	1266	4	0	0	4	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0005	1266	2	0	0	2	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0006	1266	2	0	2	0	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0007	1266	2	0	0	2	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0008	1264	2	2	0	0	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0009	1266	1	0	0	0	0	1	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0010	1266	1	0	1	0	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0011	1266	1	1	0	0	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0012	1266	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0013	1266	1	1	0	0	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0014	1266	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0015	1266	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0016	1266	1	1	0	0	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0017	1266	1	0	1	0	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	t0018	1227	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	1/0	t0019	1267	1	0	0	0	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A8_chr12_100352074_100427055	0/0	t0001	2216	115	31	20	53	2	9	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0002	2213	38	1	2	25	0	10	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0003	2217	27	1	4	21	0	1	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0004	2206	23	1	6	8	2	6	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/1	t0005	2217	17	4	3	7	1	1	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0006	2218	17	1	8	7	0	1	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0007	2216	11	8	2	0	0	1	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0008	2216	9	7	1	1	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	1/0	t0009	2215	8	2	1	4	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0010	2206	7	0	4	0	2	1	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0011	2214	6	4	1	0	0	1	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0012	2215	5	2	2	1	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0013	2216	4	0	0	0	1	3	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0014	2213	4	4	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0015	2216	2	2	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0016	2218	2	0	1	0	0	1	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0017	2215	2	2	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0018	2217	2	2	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0019	2216	1	0	0	1	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0020	2215	1	1	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0021	2217	1	0	1	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0022	2218	1	1	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0023	2215	1	0	0	0	0	1	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0024	2213	1	1	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0025	2216	1	1	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0026	2217	1	0	0	1	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0027	2216	1	1	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0028	2216	1	1	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0029	2216	1	1	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055