JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC17A8_chr12_100352074_100427055	0/0	t0030	2218	1	0	0	1	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0031	2217	1	1	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0032	2206	1	0	0	1	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	t0033	2206	1	0	0	1	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A9_chr20_62947709_62974585	0/0	t0001	2208	214	15	40	128	6	25	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	1/0	t0002	2208	108	27	16	53	5	6	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0003	2208	18	15	3	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0004	2209	16	3	7	3	1	2	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0005	2209	9	9	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0006	2209	8	7	1	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0007	2208	7	0	0	7	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0008	2209	6	4	2	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0009	2209	5	0	5	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0010	2209	5	0	4	0	1	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0011	2208	3	0	0	0	1	2	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0012	2208	3	3	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0013	2209	3	3	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0014	2209	2	2	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0015	2208	2	0	0	0	0	2	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0016	2209	2	1	1	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0017	2209	2	2	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0018	2208	2	0	1	0	1	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0019	2208	1	0	0	0	1	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0020	2209	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0021	2209	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0022	2209	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0023	2208	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0024	2208	1	0	0	0	0	1	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0025	2208	1	0	0	1	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0026	2209	1	0	0	0	0	1	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0027	2209	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0028	2208	1	0	1	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0029	2208	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0030	2208	1	0	0	1	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/1	t0031	2208	1	0	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0032	2208	1	0	0	1	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0033	2208	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0034	2208	1	0	1	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	t0035	2208	1	0	0	0	0	1	copy fasta	SLC17A9	chr20	62947709	62974585
SLC18A1_chr8_20139855_20188136	0/0	t0001	1107	197	67	25	89	4	12	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	1/1	t0002	1106	117	3	14	77	4	17	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0003	1107	78	5	20	37	5	11	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0004	1106	6	0	6	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0005	1108	6	0	4	0	2	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0006	1106	4	0	2	1	1	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0007	1107	4	4	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0008	1107	3	3	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0009	1107	3	3	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0010	1107	3	3	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0011	1108	2	0	1	0	0	1	copy fasta	SLC18A1	chr8	20139855	20188136