JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC18A1_chr8_20139855_20188136	0/0	t0012	1107	2	2	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0013	1106	1	0	0	0	0	1	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0014	1107	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0015	1106	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0016	1107	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0017	1107	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0018	1107	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0019	1107	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0020	1107	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	t0021	1107	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A2_chr10_117236114_117284430	0/0	t0001	2287	143	22	29	70	4	18	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0002	2287	74	13	4	51	0	6	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/1	t0003	2287	58	22	14	10	6	5	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0004	2281	24	4	3	16	0	1	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	1/0	t0005	2287	17	13	3	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0006	2283	13	2	2	7	0	2	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0007	2287	4	4	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0008	2287	3	3	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0009	2287	2	2	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0010	2287	2	0	2	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0011	2280	2	2	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0012	2287	2	2	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0013	2287	1	1	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0014	2287	1	0	0	1	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0015	2287	1	0	0	1	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0016	2287	1	1	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0017	2287	1	0	0	0	0	1	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0018	2287	1	1	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0019	2287	1	0	1	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0020	2287	1	0	0	0	0	1	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0021	2287	1	1	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0022	2287	1	1	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0023	2287	1	1	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	t0024	2280	1	1	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A3_chr10_49605310_49617720	0/1	t0001	813	247	62	47	89	15	33	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	t0002	813	80	6	22	47	0	5	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	t0003	813	70	1	4	65	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	t0004	813	25	9	4	7	3	2	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	1/0	t0005	813	12	6	2	1	0	2	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	t0006	813	2	1	1	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	t0007	813	1	0	0	1	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	t0008	813	1	0	0	0	0	1	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	t0009	813	1	1	0	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	t0010	813	1	0	0	1	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	t0011	813	1	0	0	0	0	1	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	t0012	813	1	0	0	1	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18B1_chr6_132764370_132803637	1/1	t0001	1082	213	30	51	90	10	30	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0002	1082	21	18	0	0	1	2	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0003	1083	14	1	2	11	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0004	1083	13	13	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637