JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC18B1_chr6_132764370_132803637	0/0	t0005	1082	10	5	1	3	0	1	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0006	1082	9	9	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0007	1082	4	0	4	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0008	1082	3	0	0	3	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0009	1082	3	0	0	1	0	2	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0010	1083	2	2	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0011	1082	2	0	0	0	1	1	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0012	1081	2	2	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0013	1082	1	1	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0014	1083	1	1	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0015	1083	1	1	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0016	1082	1	0	0	1	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0017	1082	1	1	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0018	1083	1	1	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0019	1082	1	0	0	1	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	t0020	1082	1	1	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC19A1_chr21_45507565_45547440	0/0	t0001	3229	84	31	10	36	3	4	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0002	3216	76	10	18	33	6	9	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0003	3228	43	9	11	18	1	4	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0004	3216	30	6	10	9	3	2	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0005	3229	10	1	0	4	0	5	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0006	3226	8	2	1	3	0	2	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0007	3216	6	0	0	6	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0008	3229	4	0	0	4	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0009	3226	4	4	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	1/0	t0010	3216	4	1	0	0	0	2	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0011	3217	4	0	0	3	0	1	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0012	3229	3	0	0	3	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0013	3219	3	3	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0014	3226	2	1	1	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0015	3219	2	0	0	0	1	1	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0016	3226	2	1	1	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0017	3219	2	2	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0018	3226	2	0	1	0	0	1	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0019	3227	2	2	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0020	3219	1	0	0	0	0	1	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0021	3219	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0022	3227	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0023	3226	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0024	3227	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0025	3229	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0026	3229	1	0	0	1	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0027	3229	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0028	3229	1	0	1	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0029	3229	1	0	0	1	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0030	3228	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0031	3228	1	0	0	1	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0032	3226	1	0	0	1	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0033	3226	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0034	3220	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440