JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC19A1_chr21_45507565_45547440	0/0	t0035	3218	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0036	3228	1	0	0	0	0	1	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0037	3216	1	0	1	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/1	t0038	3217	1	0	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0039	3216	1	0	0	1	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0040	3216	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0041	3216	1	0	0	1	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0042	3216	1	0	0	1	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0043	3217	1	0	0	0	0	1	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0044	3216	1	0	1	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0045	3216	1	0	0	1	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	t0046	3216	1	0	0	1	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A2_chr1_169458909_169490944	0/0	t0001	2119	228	31	48	105	12	32	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/1	t0002	2119	69	18	18	27	1	4	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0003	2119	35	3	2	23	0	7	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0004	2119	18	10	3	2	0	3	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0005	2119	9	5	3	1	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0006	2119	7	4	0	3	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0007	2119	4	4	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0008	2119	4	0	2	0	1	1	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0009	2119	2	2	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0010	2119	2	2	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0011	2119	1	1	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0012	2119	1	1	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0013	2119	1	1	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0014	2119	1	1	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0015	2119	1	0	0	1	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	1/0	t0016	2119	1	0	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0017	2119	1	1	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	t0018	2119	1	0	0	0	0	1	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A3_chr2_227678763_227723028	0/0	t0001	3726	151	15	19	91	6	20	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/1	t0002	3725	54	6	12	27	1	7	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0003	3724	49	19	21	0	4	5	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0004	3717	16	13	3	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0005	3719	15	14	1	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0006	3727	12	2	1	6	0	3	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0007	3725	11	0	5	6	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0008	3726	9	0	3	5	0	1	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0009	3716	5	5	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0010	3725	4	0	4	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0011	3723	4	2	0	2	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0012	3724	4	3	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0013	3726	4	0	0	4	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0014	3726	3	0	0	3	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0015	3726	2	0	2	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0016	3723	2	0	0	2	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0017	3726	2	0	0	0	0	2	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0018	3727	2	0	0	2	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0019	3724	2	2	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0020	3723	2	1	1	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028