JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC19A3_chr2_227678763_227723028	0/0	t0021	3726	2	1	1	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0022	3724	2	0	1	0	1	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0023	3721	2	1	0	0	0	1	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0024	3725	1	0	1	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0025	3726	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0026	3726	1	0	0	0	0	1	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0027	3723	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0028	3724	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0029	3725	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	1/0	t0030	3723	1	0	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0031	3725	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0032	3726	1	0	0	0	0	1	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0033	3727	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0034	3723	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0035	3725	1	0	1	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0036	3725	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0037	3726	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0038	3726	1	0	0	0	0	1	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0039	3726	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0040	3725	1	0	1	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0041	3724	1	0	0	0	1	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0042	3724	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0043	3724	1	0	0	0	1	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0044	3725	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0045	3727	1	0	0	0	0	1	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0046	3725	1	0	0	0	1	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0047	3726	1	0	1	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0048	3724	1	0	1	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0049	3724	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0050	3725	1	0	0	0	1	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0051	3727	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0052	3722	1	0	1	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0053	3719	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0054	3724	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0055	3724	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	t0056	3727	1	0	0	0	0	1	copy fasta	SLC19A3	chr2	227678763	227723028
SLC1A1_chr9_4485468_4592469	1/1	t0001	2124	108	26	30	16	9	25	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0002	2124	88	20	11	52	2	3	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0003	2126	80	2	17	56	2	3	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0004	2124	61	16	15	23	3	4	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0005	2124	11	11	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0006	2126	5	4	1	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0007	2126	4	2	0	2	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0008	2124	3	3	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0009	2128	2	2	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0010	2128	2	0	0	2	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0011	2124	2	2	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0012	2124	2	2	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0013	2124	2	0	0	2	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0014	2124	2	2	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469