JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC1A1_chr9_4485468_4592469	0/0	t0015	2126	1	1	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0016	2124	1	0	0	1	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0017	2124	1	1	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0018	2124	1	1	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0019	2126	1	0	0	1	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0020	2124	1	0	0	0	0	1	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0021	2124	1	0	0	1	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0022	2124	1	0	1	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0023	2124	1	0	1	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0024	2124	1	0	0	1	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0025	2124	1	0	0	1	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	t0026	2124	1	1	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A2_chr11_35246205_35424558	0/0	t0001	10281	29	1	8	16	2	2	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/1	t0002	10281	27	0	5	16	0	5	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0003	10281	24	4	5	12	0	3	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0004	10281	16	3	0	13	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0005	10281	15	0	6	6	0	3	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0006	10281	14	2	3	7	0	2	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	1/0	t0007	10282	14	0	7	4	1	1	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0008	10281	14	0	0	10	1	3	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0009	10281	11	1	0	10	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0010	10281	9	4	3	2	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0011	10281	7	0	0	7	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0012	10281	6	0	0	6	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0013	10282	5	4	1	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0014	10282	4	4	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0015	10281	4	4	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0016	10282	3	3	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0017	10282	3	0	2	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0018	10281	3	0	0	3	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0019	10281	3	0	3	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0020	10282	3	3	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0021	10281	3	3	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0022	10281	3	3	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0023	10282	3	0	1	2	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0024	10279	2	2	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0025	10281	2	0	0	2	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0026	10282	2	2	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0027	10280	2	0	0	2	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0028	10281	2	0	0	2	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0029	10282	2	2	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0030	10268	2	2	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0031	10269	2	2	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0032	10281	2	2	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0033	10282	2	0	0	1	1	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0034	10282	2	0	2	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0035	10282	2	2	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0036	10282	2	2	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0037	10280	2	2	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0038	10282	2	2	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558