JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC1A2_chr11_35246205_35424558	0/0	t0039	10280	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0040	10281	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0041	10281	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0042	10281	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0043	10280	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0044	10281	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0045	10281	1	0	0	0	0	1	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0046	10282	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0047	10282	1	0	1	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0048	10282	1	0	1	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0049	10282	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0050	10259	1	0	0	0	0	1	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0051	10280	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0052	10282	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0053	10281	1	0	1	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0054	10281	1	0	0	0	1	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0055	10282	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0056	10283	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0057	10282	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0058	10279	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0059	10268	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0060	10270	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0061	10268	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0062	10281	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0063	10281	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0064	10281	1	0	0	0	0	1	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0065	10282	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0066	10281	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0067	10281	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0068	10282	1	0	1	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0069	10282	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0070	10282	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0071	10282	1	0	0	0	0	1	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0072	10282	1	0	0	0	0	1	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0073	10281	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0074	10282	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0075	10282	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0076	10281	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0077	10282	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0078	10281	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0079	10282	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0080	10282	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0081	10282	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0082	10281	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0083	10279	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0084	10268	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0085	10281	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0086	10281	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0087	10282	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0088	10282	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558