JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC1A2_chr11_35246205_35424558	0/0	t0089	10282	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0090	10281	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	t0091	10268	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A3_chr5_36601606_36693334	1/0	t0001	2291	131	35	22	58	2	13	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0002	2291	99	1	11	62	6	19	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/1	t0003	2291	80	4	23	41	4	7	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0004	2284	11	10	1	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0005	2291	10	9	1	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0006	2291	7	7	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0007	2291	5	0	5	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0008	2291	5	4	1	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0009	2291	4	4	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0010	2289	3	0	0	3	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0011	2291	3	3	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0012	2291	2	0	0	2	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0013	2291	2	0	0	1	1	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0014	2291	2	2	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0015	2291	2	2	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0016	2291	2	2	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0017	2291	2	2	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0018	2291	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0019	2291	1	0	0	0	0	1	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0020	2291	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0021	2291	1	0	0	0	1	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0022	2291	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0023	2284	1	0	1	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0024	2291	1	0	1	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0025	2291	1	1	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0026	2291	1	1	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	t0027	2291	1	1	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A4_chr2_64984399_65028865	1/0	t0001	2965	136	14	30	65	5	21	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/1	t0002	2974	97	24	7	56	0	9	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0003	2965	32	3	3	21	2	3	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0004	2974	23	4	0	14	0	5	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0005	2983	17	9	4	1	0	3	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0006	2974	12	8	3	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0007	2974	10	10	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0008	2974	8	0	1	0	3	4	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0009	2965	7	0	0	7	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0010	2985	5	1	2	0	2	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0011	2972	3	1	1	0	1	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0012	2965	3	0	2	0	0	1	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0013	2974	3	3	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0014	2983	3	2	1	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0015	2976	2	2	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0016	2965	2	0	0	2	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0017	2974	2	1	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0018	2965	2	0	2	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0019	2974	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0020	2976	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865