Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL2L13_chr22_17633757_17735855	0/0	t0025	3502	2	0	0	0	2	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0026	3503	2	2	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0027	3502	2	1	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0028	3503	2	2	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0029	3502	2	0	0	2	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0030	3502	1	0	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0031	3502	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0032	3502	1	0	0	0	0	1	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0033	3501	1	0	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0034	3502	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0035	3503	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0036	3504	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0037	3503	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0038	3503	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0039	3501	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0040	3502	1	0	0	0	0	1	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0041	3503	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0042	3503	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0043	3503	1	0	0	0	1	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0044	3508	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0045	3501	1	0	0	0	0	1	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0046	3504	1	0	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0047	3502	1	0	0	0	1	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0048	3502	1	0	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0049	3503	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0050	3502	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0051	3502	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0052	3502	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0053	3501	1	0	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0054	3501	1	0	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0055	3502	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0056	3501	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0057	3501	1	0	0	0	0	1	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0058	3502	1	0	0	0	1	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0059	3502	1	0	0	0	1	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0060	3507	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0061	3503	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0062	3502	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0063	3502	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0064	3503	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0065	3502	1	0	1	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0066	3502	1	1	0	0	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0067	3501	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0068	3503	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L13_chr22_17633757_17735855	0/0	t0069	3502	1	0	0	1	0	0	copy fasta	BCL2L13	chr22	17633757	17735855
BCL2L14_chr12_12065939_12104695	1/0	t0001	914	322	77	58	139	13	34	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/1	t0002	914	124	11	23	71	5	13	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	t0003	914	2	2	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	t0004	914	2	2	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	t0005	914	1	0	0	0	0	1	copy fasta	BCL2L14	chr12	12065939	12104695