JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC1A4_chr2_64984399_65028865	0/0	t0021	2965	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0022	2974	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0023	2965	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0024	2965	1	0	1	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0025	2974	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0026	2976	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0027	2974	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0028	2972	1	0	0	0	1	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0029	2965	1	0	0	0	1	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0030	2965	1	0	1	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0031	2965	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0032	2965	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0033	2974	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0034	2972	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0035	2974	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0036	2974	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0037	2976	1	0	1	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0038	2974	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0039	2965	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0040	2974	1	0	1	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0041	2974	1	0	1	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0042	2974	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0043	2972	1	0	1	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0044	2983	1	0	0	0	1	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	t0045	2985	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A5_chr19_46769883_46793594	0/0	t0001	1249	104	18	27	42	3	14	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0002	1245	74	0	10	62	0	2	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0003	1247	69	15	6	41	0	7	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/1	t0004	1253	38	7	13	4	7	6	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0005	1247	30	9	6	6	2	7	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0006	1251	22	3	5	9	0	5	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0007	1255	19	7	3	4	1	4	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0008	1251	11	10	1	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	1/0	t0009	1257	10	1	2	4	1	1	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0010	1243	9	0	0	8	0	1	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0011	1255	7	6	1	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0012	1241	6	0	0	5	0	1	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0013	1251	3	3	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0014	1257	3	3	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0015	1251	3	2	0	1	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0016	1249	3	2	0	0	0	1	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0017	1251	3	0	2	1	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0018	1253	2	2	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0019	1247	1	1	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0020	1255	1	1	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0021	1245	1	0	0	1	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0022	1253	1	1	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0023	1249	1	1	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0024	1245	1	0	0	1	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0025	1246	1	0	0	1	0	0	copy fasta	SLC1A5	chr19	46769883	46793594