JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC1A5_chr19_46769883_46793594	0/0	t0026	1249	1	0	0	0	0	1	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0027	1247	1	1	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0028	1251	1	1	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0029	1251	1	1	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	t0030	1255	1	1	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A6_chr19_14945033_14984864	1/0	t0001	726	153	46	34	46	6	20	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/1	t0002	725	89	3	10	59	3	13	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	t0003	726	79	10	17	41	3	8	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	t0004	726	48	25	4	15	2	2	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	t0005	726	16	0	1	14	0	1	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	t0006	725	11	3	7	0	1	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	t0007	725	4	4	0	0	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	t0008	725	2	1	0	1	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	t0009	725	2	0	0	1	1	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	t0010	726	1	0	0	1	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	t0011	725	1	1	0	0	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	t0012	754	1	1	0	0	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	t0013	725	1	0	1	0	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A7_chr1_53082183_53147638	0/0	t0001	1016	123	8	33	56	10	16	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0002	1016	84	30	10	38	0	6	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0003	997	70	2	12	45	1	10	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0004	1016	28	8	6	4	1	9	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/1	t0005	1016	28	2	0	23	2	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	1/0	t0006	1016	27	25	1	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0007	1016	8	5	3	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0008	1016	5	0	2	3	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0009	1016	4	4	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0010	1016	3	0	0	2	0	1	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0011	1016	2	0	0	2	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0012	1016	2	1	1	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0013	1016	2	0	0	2	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0014	1016	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0015	1016	1	0	0	0	0	1	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0016	1005	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0017	1016	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0018	1016	1	0	0	0	0	1	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0019	997	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0020	997	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0021	1016	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0022	1016	1	0	1	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0023	997	1	0	1	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0024	1016	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0025	1016	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0026	1016	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	t0027	1016	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC20A1_chr2_112640939_112668825	0/0	t0001	1263	140	12	23	91	4	10	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/1	t0002	1258	119	30	21	42	8	17	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	1/0	t0003	1258	53	35	10	1	3	3	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	t0004	1263	6	0	6	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	t0005	1258	5	5	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825