JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC20A1_chr2_112640939_112668825	0/0	t0006	1258	3	3	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	t0007	1258	2	2	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	t0008	1263	1	0	0	0	0	1	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	t0009	1258	1	1	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	t0010	1258	1	0	0	0	1	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	t0011	1258	1	1	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	t0012	1258	1	1	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	t0013	1258	1	0	0	0	0	1	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A2_chr8_42411475_42506231	1/0	t0001	1794	158	34	31	61	6	25	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	t0002	1794	34	33	1	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	t0003	1794	31	13	0	18	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	t0004	1794	6	6	0	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	t0005	1794	2	2	0	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	t0006	1794	1	1	0	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	t0007	1794	1	1	0	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	t0008	1794	1	0	0	0	0	1	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	t0009	1794	1	1	0	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/1	t0010	1794	1	0	0	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	t0011	1794	1	0	0	1	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	t0012	1794	1	1	0	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC22A10_chr11_63284903_63316783	1/0	t0001	1013	169	14	21	108	7	18	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/1	t0002	1012	154	21	35	67	9	21	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0003	1012	48	46	2	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0004	1012	6	0	2	0	1	3	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0005	1014	6	0	0	6	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0006	1012	6	6	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0007	1012	3	0	2	0	1	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0008	1012	3	3	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0009	1013	2	0	0	2	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0010	1012	1	1	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0011	1014	1	0	0	1	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0012	1013	1	0	1	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0013	1013	1	0	1	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	t0014	1013	1	1	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A11_chr11_64550941_64577875	1/0	t0001	1893	292	25	61	159	13	33	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0002	1893	39	37	2	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0003	1893	11	10	1	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0004	1893	10	10	0	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0005	1893	6	0	0	6	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0006	1893	4	0	1	3	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0007	1893	4	3	1	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0008	1893	4	0	4	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0009	1893	2	2	0	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0010	1893	2	0	0	2	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0011	1893	1	1	0	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0012	1893	1	0	0	1	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0013	1893	1	0	0	1	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0014	1893	1	0	0	0	1	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0015	1893	1	0	1	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	t0016	1893	1	0	0	0	0	1	copy fasta	SLC22A11	chr11	64550941	64577875