JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC22A15_chr1_115971513_116075054	0/0	t0018	3062	1	0	0	1	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	t0019	3062	1	1	0	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	t0020	3062	1	1	0	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A16_chr6_110419687_110481613	1/1	t0001	226	295	80	63	111	13	26	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	t0002	226	118	15	13	75	3	12	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	t0003	226	2	0	0	2	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	t0004	226	1	1	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A17_chr14_23341318_23357887	1/1	t0001	477	428	91	74	197	16	48	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	t0002	476	6	6	0	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	t0003	477	3	0	0	3	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	t0004	476	1	1	0	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	t0005	477	1	1	0	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	t0006	477	1	1	0	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A18_chr11_2897278_2930246	0/1	t0001	269	405	100	80	158	18	48	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A1_chr6_160116815_160163718	1/1	t0001	258	413	89	72	189	16	45	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	t0002	258	1	0	0	1	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	t0003	258	1	1	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	t0004	258	1	0	0	0	0	1	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A23_chr6_3263973_3462050	0/0	t0001	4580	65	6	19	32	0	8	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	1/0	t0002	4574	17	0	6	9	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/1	t0003	4580	13	0	6	3	0	3	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0004	4579	11	11	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0005	4581	11	10	0	0	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0006	4579	8	1	3	4	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0007	4577	8	6	2	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0008	4577	6	1	0	5	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0009	4581	6	4	1	0	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0010	4577	5	4	1	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0011	4579	5	5	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0012	4579	4	0	1	3	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0013	4580	4	1	3	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0014	4577	3	2	1	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0015	4581	3	3	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0016	4581	3	2	0	0	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0017	4574	2	0	1	1	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0018	4581	2	2	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0019	4579	2	2	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0020	4580	2	0	0	2	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0021	4581	2	2	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0022	4581	2	2	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0023	4581	2	0	2	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0024	4579	2	1	0	0	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0025	4579	1	0	1	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0026	4577	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0027	4577	1	0	0	1	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0028	4579	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0029	4581	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0030	4581	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0031	4580	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0032	4577	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050