JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC22A23_chr6_3263973_3462050	0/0	t0033	4581	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0034	4580	1	0	1	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0035	4577	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0036	4581	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0037	4577	1	0	0	1	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0038	4580	1	0	0	0	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0039	4580	1	0	0	1	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0040	4581	1	0	0	1	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0041	4580	1	0	1	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0042	4580	1	0	0	1	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0043	4580	1	0	0	1	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0044	4574	1	0	0	0	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0045	4574	1	0	0	0	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0046	4581	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0047	4578	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0048	4574	1	0	0	0	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0049	4579	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0050	4579	1	0	0	0	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0051	4574	1	0	0	1	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0052	4577	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0053	4577	1	0	1	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0054	4577	1	0	0	0	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0055	4578	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0056	4581	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0057	4581	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	t0058	4579	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A24_chr11_63074940_63149221	0/1	t0001	443	278	44	46	135	16	36	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	1/0	t0002	443	78	32	12	27	2	4	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	t0003	443	5	5	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	t0004	443	3	3	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	t0005	443	1	0	0	1	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	t0006	443	1	0	0	1	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A25_chr11_63153437_63248599	0/0	t0001	6548	77	9	15	34	8	11	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0002	6548	71	1	19	37	5	9	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0003	6548	49	0	2	41	0	6	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0004	6548	16	9	1	1	0	5	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0005	6548	12	0	0	12	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0006	6548	9	0	7	2	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0007	6549	7	6	1	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0008	6548	7	0	4	2	0	1	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0009	6548	6	0	0	6	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0010	6548	6	6	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0011	6548	6	2	2	0	1	1	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0012	6548	5	1	4	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0013	6548	4	4	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0014	6548	3	3	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0015	6548	3	3	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0016	6548	3	3	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0017	6548	2	2	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0018	6548	2	2	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599