JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC22A25_chr11_63153437_63248599	0/0	t0019	6548	2	2	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0020	6548	2	0	2	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0021	6548	2	2	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0022	6548	2	1	1	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/1	t0023	6548	2	0	0	0	0	1	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0024	6548	2	2	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0025	6548	2	0	0	0	2	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0026	6548	2	0	2	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0027	6548	2	0	2	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0028	6548	2	2	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0029	6548	2	2	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0030	6548	2	2	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0031	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0032	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0033	6548	1	0	1	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0034	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0035	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0036	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0037	6549	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0038	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0039	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0040	6548	1	0	0	1	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0041	6548	1	0	0	1	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0042	6548	1	0	0	1	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0043	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0044	6548	1	0	0	0	0	1	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0045	6548	1	0	0	1	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0046	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0047	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0048	6548	1	0	1	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0049	6548	1	0	0	1	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0050	6548	1	0	0	1	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0051	6548	1	0	0	1	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0052	6548	1	0	0	0	0	1	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0053	6548	1	0	0	1	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0054	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	1/0	t0055	6549	1	0	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0056	6548	1	0	0	1	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0057	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0058	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0059	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0060	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0061	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	t0062	6548	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A2_chr6_160211755_160263821	0/1	t0001	742	196	29	35	90	12	29	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	1/0	t0002	742	68	31	8	25	0	3	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	t0003	742	37	18	5	8	0	6	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	t0004	743	5	4	0	1	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	t0005	742	2	2	0	0	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	t0006	742	1	0	0	1	0	0	copy fasta	SLC22A2	chr6	160211755	160263821