JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC22A5_chr5_132364710_132400612	0/0	t0019	1603	1	0	1	0	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	t0020	1604	1	0	0	0	0	1	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	t0021	1604	1	0	0	1	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	t0022	1604	1	1	0	0	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	t0023	1605	1	0	0	0	0	1	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	t0024	1604	1	0	0	1	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	t0025	1592	1	0	0	0	1	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	t0026	1604	1	1	0	0	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	t0027	1603	1	1	0	0	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A5_chr5_132364710_132400612	0/0	t0028	1603	1	0	0	1	0	0	copy fasta	SLC22A5	chr5	132364710	132400612
SLC22A6_chr11_62971597_62989967	1/1	t0001	475	317	48	59	157	15	36	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	t0002	475	91	27	10	47	1	6	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	t0003	475	9	1	4	2	0	2	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	t0004	475	5	3	0	2	0	0	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	t0005	475	2	2	0	0	0	0	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	t0006	475	2	2	0	0	0	0	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	t0007	475	1	0	0	1	0	0	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	t0008	475	1	0	1	0	0	0	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	t0009	475	1	1	0	0	0	0	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A6_chr11_62971597_62989967	0/0	t0010	475	1	0	0	1	0	0	copy fasta	SLC22A6	chr11	62971597	62989967
SLC22A7_chr6_43293260_43310538	1/1	t0001	913	399	94	73	175	12	43	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	t0002	913	3	2	1	0	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	t0003	913	1	0	0	0	0	1	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	t0004	913	1	0	0	1	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A8_chr11_62987824_63020841	1/1	t0001	552	369	88	70	147	16	46	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	t0002	552	58	5	2	51	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	t0003	552	3	0	0	3	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	t0004	552	1	0	0	1	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	t0005	552	1	1	0	0	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A9_chr11_63364785_63415294	0/0	t0001	705	48	3	14	10	11	10	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0002	725	46	1	4	32	1	8	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	1/0	t0003	705	43	6	11	13	3	9	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0004	725	33	3	4	26	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0005	722	10	0	2	5	0	3	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0006	709	9	8	1	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0007	726	9	1	3	4	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0008	708	7	2	0	2	0	3	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0009	712	7	6	1	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0010	722	7	1	2	4	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/1	t0011	706	7	1	3	1	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0012	723	5	0	4	0	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0013	705	4	4	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0014	735	4	3	1	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0015	744	4	4	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0016	725	4	4	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0017	726	4	0	0	3	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0018	706	4	1	2	0	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0019	704	4	0	0	4	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0020	717	4	1	1	1	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0021	721	4	0	0	3	0	1	copy fasta	SLC22A9	chr11	63364785	63415294