JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC22A9_chr11_63364785_63415294	0/0	t0022	717	3	2	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0023	705	3	0	0	2	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0024	705	3	0	2	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0025	705	3	1	2	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0026	725	3	3	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0027	721	3	0	2	0	1	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0028	731	2	2	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0029	740	2	2	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0030	739	2	2	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0031	721	2	0	0	2	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0032	716	2	2	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0033	705	2	1	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0034	709	2	2	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0035	723	2	1	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0036	724	2	0	0	1	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0037	705	2	0	1	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0038	704	2	0	1	0	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0039	708	2	0	0	1	1	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0040	733	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0041	732	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0042	727	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0043	722	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0044	723	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0045	735	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0046	726	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0047	728	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0048	727	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0049	743	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0050	730	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0051	746	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0052	727	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0053	719	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0054	726	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0055	724	1	0	0	0	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0056	718	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0057	729	1	0	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0058	733	1	0	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0059	722	1	0	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0060	720	1	0	0	0	1	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0061	740	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0062	720	1	0	0	0	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0063	705	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0064	735	1	0	1	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0065	740	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0066	739	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0067	727	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0068	726	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0069	719	1	0	0	0	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0070	724	1	0	1	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0071	718	1	0	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294