Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL2L14_chr12_12065939_12104695	0/0	t0006	914	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	t0007	914	1	0	1	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L14_chr12_12065939_12104695	0/0	t0008	914	1	1	0	0	0	0	copy fasta	BCL2L14	chr12	12065939	12104695
BCL2L15_chr1_113871816_113892581	0/0	t0001	4513	82	2	24	52	2	2	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0002	4513	65	22	16	15	2	10	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0003	4514	55	1	10	42	0	2	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/1	t0004	4518	44	0	12	18	3	10	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0005	4513	23	0	5	15	2	1	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0006	4513	12	0	0	12	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0007	4513	11	0	0	11	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0008	4513	8	7	1	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0009	4518	7	0	4	0	1	2	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0010	4513	6	0	0	6	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0011	4513	6	0	0	6	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0012	4513	5	5	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0013	4513	5	0	0	5	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0014	4513	4	4	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0015	4514	4	3	1	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0016	4513	4	0	0	4	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0017	4514	4	0	1	3	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0018	4514	4	0	0	2	0	2	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0019	4514	4	0	0	3	0	1	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0020	4513	3	1	0	0	0	2	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0021	4513	3	3	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0022	4513	3	2	1	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0023	4513	3	0	0	1	0	2	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0024	4514	2	2	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0025	4512	2	2	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0026	4512	2	2	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0027	4513	2	2	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0028	4513	2	2	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0029	4513	2	2	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0030	4514	2	0	0	0	0	2	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0031	4518	2	0	0	0	0	2	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0032	4514	2	0	0	0	1	1	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0033	4518	2	0	0	0	2	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0034	4514	2	0	0	2	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0035	4514	2	0	0	2	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0036	4513	2	0	0	1	0	1	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0037	4517	2	0	1	1	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0038	4518	2	0	2	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0039	4514	2	0	0	2	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0040	4512	1	0	0	0	0	1	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0041	4518	1	1	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0042	4517	1	1	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0043	4518	1	1	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0044	4518	1	1	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0045	4515	1	1	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0046	4514	1	1	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0047	4514	1	1	0	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581