JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC22A9_chr11_63364785_63415294	0/0	t0072	724	1	0	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0073	705	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0074	716	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0075	720	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	t0076	705	1	0	1	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC23A1_chr5_139362196_139388297	1/1	t0001	500	332	84	64	129	18	35	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	t0002	500	12	4	0	8	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	t0003	500	3	0	0	3	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	t0004	500	1	0	0	0	0	1	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	t0005	500	1	1	0	0	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	t0006	500	1	1	0	0	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A2_chr20_4847358_5006510	0/0	t0001	5001	18	0	5	10	0	3	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	1/1	t0002	5001	15	0	4	7	2	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0003	5001	12	2	2	4	3	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0004	5001	10	0	7	0	0	3	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0005	4997	8	7	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0006	4997	6	6	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0007	4997	4	0	0	3	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0008	4997	4	0	3	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0009	4997	3	2	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0010	4999	3	2	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0011	5001	2	0	0	2	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0012	5001	2	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0013	5003	2	0	0	2	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0014	4997	2	0	0	1	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0015	4997	2	0	0	2	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0016	4997	2	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0017	5003	2	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0018	4997	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0019	4997	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0020	4999	2	0	0	0	1	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0021	4997	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0022	4997	2	0	1	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0023	4997	2	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0024	4997	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0025	4997	2	0	0	2	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0026	4999	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0027	5002	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0028	4997	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0029	5001	2	0	2	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0030	4999	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0031	4998	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0032	4999	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0033	4997	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0034	5001	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0035	5001	1	0	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0036	4999	1	0	0	1	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0037	5001	1	0	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0038	4999	1	0	0	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0039	4997	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510