JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SLC23A2_chr20_4847358_5006510	0/0	t0040	5001	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0041	4997	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0042	5001	1	0	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0043	5001	1	0	1	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0044	5001	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0045	4999	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0046	5000	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0047	4996	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0048	5001	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0049	4997	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0050	5001	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0051	4997	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0052	4997	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0053	4997	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0054	4999	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0055	4997	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0056	4999	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0057	5001	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0058	4997	1	0	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0059	4999	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0060	4997	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0061	4999	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0062	4999	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0063	4997	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0064	4997	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0065	4997	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0066	4997	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0067	4997	1	0	1	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0068	5001	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0069	4997	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0070	4997	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0071	4997	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0072	5001	1	0	1	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0073	5003	1	0	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0074	5003	1	0	1	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0075	4997	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0076	5001	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0077	4999	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0078	4999	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0079	4997	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0080	5000	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0081	5001	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0082	4999	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0083	4997	1	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0084	4997	1	0	1	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0085	5001	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0086	5003	1	0	1	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0087	4997	1	0	1	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0088	4997	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0089	4997	1	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510