JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC23A2_chr20_4847358_5006510	0/0	t0090	4999	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0091	4997	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0092	4997	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0093	5001	1	0	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0094	4999	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0095	4997	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0096	5001	1	0	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0097	5001	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0098	4997	1	0	0	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0099	4997	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0100	4997	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0101	4997	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0102	4999	1	0	0	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0103	4997	1	0	0	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0104	4997	1	0	0	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0105	4997	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0106	4997	1	0	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0107	4997	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0108	4997	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	t0109	5003	1	0	0	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A3_chr2_219156465_219175029	1/0	t0001	490	276	69	40	135	4	27	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/1	t0002	490	145	28	27	66	6	17	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	t0003	490	11	0	5	2	2	2	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	t0004	490	1	0	0	1	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	t0005	490	1	1	0	0	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC24A1_chr15_65616938_65661260	1/1	t0001	2463	261	56	42	123	11	27	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0002	2463	12	3	0	6	0	3	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0003	2464	11	8	0	2	1	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0004	2464	10	4	5	0	0	1	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0005	2463	5	0	2	0	1	2	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0006	2463	4	4	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0007	2463	3	3	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0008	2463	3	3	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0009	2463	2	0	0	2	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0010	2463	2	0	0	0	1	1	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0011	2463	2	0	0	0	0	2	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0012	2463	1	0	0	1	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0013	2463	1	1	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0014	2463	1	1	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0015	2463	1	0	1	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0016	2463	1	0	1	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0017	2463	1	1	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0018	2463	1	1	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0019	2463	1	1	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	t0020	2463	1	0	1	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A2_chr9_19502455_19794037	1/0	t0001	9005	16	1	9	1	2	2	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0002	8985	10	4	0	6	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0003	8986	10	2	2	1	1	4	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0004	9006	6	6	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0005	8982	6	6	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037