JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC24A2_chr9_19502455_19794037	0/0	t0006	9009	5	1	0	2	0	2	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0007	9005	5	0	0	3	0	2	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0008	9011	4	0	1	0	1	2	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0009	8987	4	0	0	4	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0010	8985	4	4	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/1	t0011	8985	4	0	0	2	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0012	9007	3	0	1	1	1	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0013	9008	3	3	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0014	8984	3	1	0	1	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0015	9006	3	2	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0016	9007	3	0	2	0	1	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0017	9018	3	3	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0018	9010	3	1	0	0	2	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0019	9009	2	0	2	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0020	9014	2	1	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0021	8985	2	2	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0022	8986	2	2	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0023	8985	2	2	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0024	9020	2	2	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0025	9012	2	2	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0026	9010	2	1	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0027	8986	2	0	2	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0028	8985	2	0	2	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0029	9004	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0030	9012	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0031	9015	1	0	0	0	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0032	9011	1	0	0	0	1	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0033	9017	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0034	9007	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0035	9004	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0036	9017	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0037	9016	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0038	9013	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0039	9013	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0040	9013	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0041	9010	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0042	9010	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0043	9007	1	0	0	0	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0044	9008	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0045	9007	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0046	9008	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0047	9007	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0048	9006	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0049	9003	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0050	9004	1	0	0	0	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0051	9002	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0052	8995	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0053	8996	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0054	9011	1	0	0	0	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0055	9005	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037