JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC24A2_chr9_19502455_19794037	0/0	t0056	8987	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0057	9021	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0058	9012	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0059	8990	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0060	8985	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0061	9013	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0062	9007	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0063	8987	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0064	8998	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0065	8987	1	0	0	0	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0066	8985	1	0	0	0	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0067	8982	1	0	0	0	1	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0068	9009	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0069	8985	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0070	8986	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0071	9006	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0072	9037	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0073	9009	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0074	9005	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0075	9005	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0076	9006	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0077	9007	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0078	9005	1	0	0	0	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0079	9006	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0080	9005	1	0	0	0	1	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0081	9005	1	0	0	0	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0082	9014	1	0	0	0	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0083	9013	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0084	9006	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0085	8993	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0086	8992	1	0	0	0	1	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0087	8963	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0088	8963	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0089	9014	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0090	9006	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0091	9005	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0092	8985	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0093	8985	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0094	9018	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0095	9013	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0096	9014	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0097	9010	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0098	9005	1	0	0	0	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0099	9003	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0100	8995	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	t0101	8987	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A3_chr20_19207642_19727926	0/0	t0001	1988	49	31	12	4	0	2	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0002	1988	48	16	11	10	1	10	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0003	1988	17	6	7	1	1	2	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0004	1988	12	7	2	0	1	2	copy fasta	SLC24A3	chr20	19207642	19727926