JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC24A3_chr20_19207642_19727926	0/0	t0005	1988	6	1	4	0	0	1	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0006	1989	4	4	0	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0007	1988	4	4	0	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0008	1988	3	3	0	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0009	1988	3	0	1	2	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0010	1988	2	1	1	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0011	1988	2	0	2	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0012	1988	1	0	0	0	1	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0013	1988	1	0	0	1	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0014	1988	1	0	1	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0015	1988	1	1	0	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0016	1988	1	1	0	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0017	1988	1	0	0	1	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0018	1988	1	0	0	1	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0019	1988	1	0	1	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0020	1988	1	0	0	0	0	1	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	t0021	1988	1	1	0	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A4_chr14_92318165_92506481	0/0	t0001	8528	15	3	4	6	1	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0002	8527	14	3	8	1	1	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0003	8520	14	1	5	2	3	3	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0004	8520	12	2	5	4	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0005	8528	12	1	3	3	0	5	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0006	8528	12	8	3	1	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0007	8526	9	0	1	5	1	2	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/1	t0008	8527	8	1	3	2	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0009	8520	8	1	0	7	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0010	8528	7	3	2	0	2	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0011	8520	7	2	1	4	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0012	8520	7	0	2	4	1	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0013	8520	6	6	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0014	8520	6	6	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0015	8526	5	0	5	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0016	8520	4	1	2	0	1	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0017	8526	4	0	0	4	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0018	8527	3	0	0	2	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0019	8521	3	0	1	1	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0020	8520	3	2	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0021	8527	3	1	0	1	1	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0022	8528	3	3	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0023	8520	3	3	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0024	8527	3	3	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0025	8527	2	0	1	0	1	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0026	8520	2	1	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0027	8522	2	2	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0028	8520	2	0	1	0	1	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0029	8521	2	2	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0030	8528	2	2	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0031	8527	2	0	0	0	0	2	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0032	8526	2	0	0	2	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0033	8527	2	0	0	2	0	0	copy fasta	SLC24A4	chr14	92318165	92506481