JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC24A4_chr14_92318165_92506481	0/0	t0084	8520	1	0	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0085	8527	1	0	0	0	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0086	8529	1	0	0	0	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0087	8527	1	0	0	0	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0088	8528	1	0	0	0	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0089	8527	1	0	0	1	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0090	8520	1	0	0	1	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0091	8520	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0092	8528	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0093	8527	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0094	8520	1	0	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0095	8527	1	0	0	1	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0096	8526	1	0	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0097	8528	1	0	0	0	1	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0098	8527	1	0	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0099	8528	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0100	8528	1	0	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0101	8527	1	0	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0102	8520	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0103	8520	1	0	0	0	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0104	8520	1	0	0	0	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0105	8520	1	0	0	1	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0106	8521	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0107	8520	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0108	8520	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0109	8519	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0110	8521	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0111	8521	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0112	8520	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0113	8528	1	0	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0114	8527	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0115	8527	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	1/0	t0116	8520	1	0	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0117	8527	1	0	0	0	1	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	t0118	8527	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A5_chr15_48115990_48147672	1/1	t0001	377	338	87	48	173	4	24	copy fasta	SLC24A5	chr15	48115990	48147672
SLC24A5_chr15_48115990_48147672	0/0	t0002	377	5	0	2	3	0	0	copy fasta	SLC24A5	chr15	48115990	48147672
SLC24A5_chr15_48115990_48147672	0/0	t0003	377	1	1	0	0	0	0	copy fasta	SLC24A5	chr15	48115990	48147672
SLC25A10_chr17_81707284_81726012	0/0	t0001	1079	208	39	36	97	9	27	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0002	1078	64	3	4	51	2	4	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0003	1079	56	7	19	16	2	12	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/1	t0004	1079	20	7	5	0	2	5	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	1/0	t0005	1079	16	6	5	2	1	1	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0006	1079	6	5	1	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0007	1078	5	0	1	4	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0008	1072	5	5	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0009	1079	3	2	0	1	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0010	1079	3	3	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0011	1079	2	0	2	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0012	1079	2	2	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012