JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A10_chr17_81707284_81726012	0/0	t0013	1079	2	2	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0014	1079	2	2	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0015	1072	2	2	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0016	1079	1	1	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0017	1079	1	0	1	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0018	1079	1	1	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0019	1078	1	0	0	0	0	1	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0020	1079	1	0	1	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0021	1079	1	0	1	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0022	1079	1	0	1	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0023	1079	1	1	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0024	1079	1	1	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0025	1079	1	0	0	1	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0026	1079	1	0	1	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0027	1079	1	0	0	1	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0028	1079	1	0	1	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0029	1079	1	0	0	1	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0030	1079	1	0	0	1	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0031	1079	1	0	1	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0032	1079	1	0	0	1	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	t0033	1079	1	1	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A11_chr17_4932130_4945046	0/1	t0001	749	225	61	48	85	8	22	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A11_chr17_4932130_4945046	1/0	t0002	748	125	1	13	83	4	23	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A11_chr17_4932130_4945046	0/0	t0003	749	70	22	18	27	1	2	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A11_chr17_4932130_4945046	0/0	t0004	749	5	2	1	0	1	1	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A11_chr17_4932130_4945046	0/0	t0005	748	3	0	0	3	0	0	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A11_chr17_4932130_4945046	0/0	t0006	749	2	2	0	0	0	0	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A11_chr17_4932130_4945046	0/0	t0007	749	1	1	0	0	0	0	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A11_chr17_4932130_4945046	0/0	t0008	749	1	1	0	0	0	0	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A11_chr17_4932130_4945046	0/0	t0009	748	1	0	0	1	0	0	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A11_chr17_4932130_4945046	0/0	t0010	1081	1	0	0	1	0	0	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A12_chr2_171778405_171899244	1/0	t0001	1900	200	38	36	97	5	23	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	t0002	1900	74	22	9	42	1	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/1	t0003	1900	21	1	7	1	1	10	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	t0004	1900	5	3	1	1	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	t0005	1900	3	0	3	0	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	t0006	1900	3	3	0	0	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	t0007	1900	2	0	0	1	0	1	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	t0008	1900	1	1	0	0	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	t0009	1900	1	0	0	0	0	1	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	t0010	1900	1	0	0	0	1	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	t0011	1900	1	1	0	0	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	t0012	1900	1	0	0	0	0	1	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	t0013	1900	1	1	0	0	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A13_chr7_96115220_96327098	1/1	t0001	1114	261	74	38	122	3	22	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	t0002	1114	5	5	0	0	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	t0003	1114	3	3	0	0	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	t0004	1114	2	0	0	2	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	t0005	1114	1	0	0	1	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	t0006	1114	1	0	0	0	1	0	copy fasta	SLC25A13	chr7	96115220	96327098