JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A13_chr7_96115220_96327098	0/0	t0007	1114	1	0	0	1	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	t0008	1114	1	0	0	0	0	1	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	t0009	1114	1	0	0	0	0	1	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A14_chrX_130334919_130378357	1/1	t0001	638	291	78	52	120	13	26	copy fasta	SLC25A14	chrX	130334919	130378357
SLC25A15_chr13_40784611_40817460	1/1	t0001	2916	166	35	32	71	8	18	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0002	2916	114	17	30	53	6	8	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0003	2911	55	0	4	46	0	5	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0004	2916	18	14	4	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0005	2916	9	0	0	8	0	1	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0006	2916	8	3	4	1	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0007	2916	5	0	2	0	2	1	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0008	2916	4	4	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0009	2916	3	3	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0010	2916	3	3	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0011	2916	2	0	2	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0012	2916	2	2	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0013	2916	2	0	0	2	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0014	2911	2	2	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0015	2916	2	0	0	0	0	2	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0016	2916	1	0	1	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0017	2930	1	0	0	1	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0018	2916	1	1	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0019	2916	1	0	0	0	0	1	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0020	2916	1	0	0	1	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0021	2916	1	0	0	1	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0022	2916	1	1	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0023	2916	1	1	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0024	2885	1	0	0	0	0	1	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0025	2916	1	1	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0026	2916	1	0	0	0	0	1	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0027	2916	1	1	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0028	2930	1	0	0	1	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0029	2916	1	0	1	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0030	2916	1	0	0	1	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0031	2916	1	1	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0032	2916	1	1	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0033	2911	1	0	0	1	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0034	2916	1	0	0	1	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0035	2916	1	0	1	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	t0036	2911	1	0	1	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A16_chr10_68472998_68532523	0/0	t0001	5580	98	37	17	27	4	13	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/1	t0002	5580	64	0	8	39	4	12	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0003	5586	24	1	5	11	0	7	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0004	5580	9	0	2	7	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0005	5580	7	0	0	7	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0006	5579	6	1	1	4	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0007	5592	6	5	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0008	5587	6	1	0	0	1	4	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0009	5583	5	0	5	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0010	5585	4	4	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523