JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A16_chr10_68472998_68532523	0/0	t0011	5586	4	0	0	4	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0012	5584	3	2	0	0	0	1	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0013	5588	3	3	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0014	5584	3	0	2	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0015	5581	3	3	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0016	5584	2	2	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0017	5587	2	1	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0018	5580	2	0	1	0	1	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0019	5581	2	0	0	1	0	1	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0020	5588	2	2	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0021	5585	2	2	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0022	5587	2	0	0	1	0	1	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0023	5585	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0024	5585	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0025	5586	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0026	5584	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0027	5584	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0028	5586	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0029	5580	1	0	0	0	0	1	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0030	5588	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0031	5580	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0032	5579	1	0	0	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0033	5579	1	0	0	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0034	5584	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0035	5581	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0036	5580	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0037	5580	1	0	0	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0038	5579	1	0	0	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0039	5580	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0040	5749	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0041	5579	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0042	5579	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0043	5579	1	0	0	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0044	5581	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0045	5581	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0046	5580	1	0	0	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0047	5580	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0048	5583	1	0	0	0	0	1	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0049	5583	1	0	0	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0050	5580	1	0	0	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0051	5580	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0052	5580	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0053	5582	1	0	0	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0054	5580	1	0	0	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0055	5580	1	0	0	1	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0056	5586	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0057	5588	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0058	5585	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0059	5589	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	t0060	5591	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523