JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A19_chr17_75267992_75294433	1/0	t0008	668	3	2	0	0	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	t0009	668	2	2	0	0	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	t0010	668	2	1	0	1	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	t0011	668	2	0	2	0	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	t0012	668	2	0	0	1	0	1	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	t0013	668	1	0	1	0	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	t0014	668	1	1	0	0	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	t0015	668	1	0	0	1	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	t0016	668	1	1	0	0	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	t0017	664	1	1	0	0	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	t0018	664	1	1	0	0	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	t0019	664	1	1	0	0	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A1_chr22_19170581_19183736	0/1	t0001	649	363	82	61	169	13	37	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	1/0	t0002	613	44	4	17	11	4	7	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	t0003	649	6	6	0	0	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	t0004	649	2	0	0	2	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	t0005	649	2	2	0	0	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	t0006	647	2	0	2	0	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	t0007	649	1	1	0	0	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	t0008	649	1	0	0	1	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	t0009	649	1	0	0	1	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	t0010	613	1	1	0	0	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	t0011	649	1	0	0	0	1	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A20_chr3_48851926_48903882	1/1	t0001	873	184	75	35	44	12	16	copy fasta	SLC25A20	chr3	48851926	48903882
SLC25A20_chr3_48851926_48903882	0/0	t0002	873	8	8	0	0	0	0	copy fasta	SLC25A20	chr3	48851926	48903882
SLC25A20_chr3_48851926_48903882	0/0	t0003	873	1	1	0	0	0	0	copy fasta	SLC25A20	chr3	48851926	48903882
SLC25A20_chr3_48851926_48903882	0/0	t0004	873	1	0	1	0	0	0	copy fasta	SLC25A20	chr3	48851926	48903882
SLC25A21_chr14_36672921_37177606	0/0	t0001	2994	32	12	6	8	1	5	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0002	3006	26	6	7	9	0	4	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0003	3008	25	2	4	15	1	3	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0004	2998	21	7	1	12	0	1	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0005	2994	7	6	1	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0006	3006	7	5	2	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0007	3008	5	1	3	0	0	1	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0008	3006	5	4	1	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0009	3008	4	4	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0010	3006	4	4	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0011	3006	3	3	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0012	3008	2	0	0	2	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0013	3008	2	1	1	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0014	3003	2	2	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0015	3006	2	2	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0016	3006	2	2	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0017	3008	1	0	1	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0018	2998	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0019	2998	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0020	3008	1	0	0	1	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0021	2996	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0022	3008	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0023	3008	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606