JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A21_chr14_36672921_37177606	0/0	t0024	3006	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0025	3006	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0026	2994	1	0	0	1	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0027	2994	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0028	2994	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0029	3008	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0030	3006	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	t0031	2994	1	0	1	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A22_chr11_785475_803281	1/0	t0001	1669	156	42	29	59	5	20	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/1	t0002	1669	115	12	35	57	5	5	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0003	1669	62	9	1	40	0	12	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0004	1669	17	1	2	10	1	3	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0005	1671	11	10	1	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0006	1671	6	5	1	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0007	1671	5	5	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0008	1675	4	4	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0009	1671	3	3	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0010	1669	3	3	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0011	1672	3	0	0	3	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0012	1669	3	0	2	0	1	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0013	1669	2	0	2	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0014	1669	2	2	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0015	1669	2	1	1	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0016	1669	2	0	1	0	0	1	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0017	1688	2	0	0	2	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0018	1669	1	0	0	1	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0019	1669	1	0	0	1	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0020	1669	1	0	0	1	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0021	1704	1	0	0	1	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0022	1669	1	0	1	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0023	1669	1	1	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0024	1669	1	1	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0025	1669	1	0	1	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0026	1669	1	0	0	0	0	1	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0027	1675	1	1	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0028	1688	1	0	1	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	t0029	1669	1	0	0	1	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A23_chr19_6435064_6464792	1/1	t0001	2076	166	30	28	76	7	23	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0002	2076	124	21	30	54	7	12	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0003	2019	17	9	5	0	1	2	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0004	2076	5	3	0	0	0	2	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0005	2076	5	0	1	0	0	4	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0006	2076	5	5	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0007	2076	5	5	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0008	2077	4	3	0	1	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0009	2076	3	0	2	0	0	1	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0010	2076	3	0	0	1	1	1	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0011	2076	2	0	0	2	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0012	2076	2	0	0	0	2	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0013	2077	1	0	0	0	0	1	copy fasta	SLC25A23	chr19	6435064	6464792