JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A23_chr19_6435064_6464792	0/0	t0014	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0015	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0016	2076	1	0	0	0	0	1	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0017	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0018	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0019	2018	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0020	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0021	2076	1	0	0	0	0	1	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0022	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0023	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0024	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0025	2076	1	0	0	1	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0026	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0027	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0028	2076	1	0	0	1	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0029	2077	1	0	0	1	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0030	2076	1	0	0	1	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0031	2076	1	0	1	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0032	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0033	2019	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0034	2019	1	0	1	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0035	2019	1	0	0	0	0	1	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0036	2077	1	0	0	0	0	1	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	t0037	2076	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A24_chr1_108129043_108205343	1/0	t0001	2816	141	18	22	81	7	12	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/1	t0002	2816	101	4	17	61	3	15	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0003	2816	21	0	3	16	0	2	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0004	2816	17	10	1	0	1	5	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0005	2809	14	4	4	0	3	3	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0006	2809	11	8	2	0	0	1	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0007	2816	9	9	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0008	2809	7	7	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0009	2816	6	0	6	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0010	2816	6	2	2	1	0	1	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0011	2809	5	2	0	0	0	3	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0012	2809	5	5	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0013	2816	4	4	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0014	2817	4	0	0	4	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0015	2816	3	0	0	0	1	2	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0016	2816	2	0	0	0	0	2	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0017	2816	2	0	2	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0018	2816	2	0	1	0	1	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0019	2809	1	1	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0020	2809	1	1	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0021	2810	1	1	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0022	2809	1	1	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0023	2816	1	0	1	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0024	2817	1	1	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0025	2816	1	0	1	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0026	2816	1	0	1	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343