JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A24_chr1_108129043_108205343	0/0	t0027	2816	1	1	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0028	2816	1	1	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0029	2797	1	0	1	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0030	2816	1	0	0	1	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0031	2816	1	1	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	t0032	2816	1	1	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A25_chr9_128063232_128114245	0/1	t0001	1890	126	28	31	47	2	17	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	t0002	1890	56	8	14	28	0	6	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	t0003	1890	55	47	6	2	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	t0004	1890	15	0	4	8	0	3	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	1/0	t0005	1890	4	3	0	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	t0006	1890	3	2	1	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	t0007	1890	2	2	0	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	t0008	1890	2	0	0	2	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	t0009	1890	1	1	0	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	t0010	1890	1	1	0	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	t0011	1890	1	0	0	1	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A26_chr3_66216001_66383923	1/1	t0001	1211	102	28	25	35	4	8	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0002	1215	100	9	11	64	3	13	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0003	1215	46	12	11	11	1	11	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0004	1211	21	20	1	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0005	1215	4	4	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0006	1211	3	3	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0007	1215	3	0	3	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0008	1211	3	3	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0009	1211	2	1	1	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0010	1215	2	2	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0011	1211	1	1	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0012	1215	1	0	0	0	1	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0013	1211	1	0	0	0	1	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0014	1211	1	1	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0015	1211	1	0	0	1	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0016	1215	1	1	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0017	1211	1	1	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0018	1211	1	1	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0019	1211	1	1	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0020	1215	1	0	0	1	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0021	1211	1	1	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	t0022	1215	1	1	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A27_chr6_46647975_46683190	0/0	t0001	1931	101	10	14	52	3	22	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0002	1967	38	5	4	23	2	4	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0003	1953	31	0	7	18	3	3	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0004	1971	28	3	7	12	2	4	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0005	1965	28	14	6	5	1	2	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0006	1969	20	5	3	9	2	1	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0007	1963	19	8	2	8	1	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	1/1	t0008	1955	18	9	4	2	1	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0009	1973	14	1	2	11	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0010	1975	13	1	0	12	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0011	1933	10	3	7	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190