JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A27_chr6_46647975_46683190	0/0	t0012	1977	7	0	0	6	0	1	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0013	1959	7	4	1	2	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0014	1957	5	4	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0015	1949	5	4	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0016	1933	3	3	0	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0017	1955	3	0	3	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0018	1961	3	1	0	2	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0019	1951	3	2	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0020	1954	2	0	2	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0021	1963	2	2	0	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0022	1969	2	0	0	2	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0023	1979	2	1	0	0	0	1	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0024	1956	1	0	1	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0025	1967	1	1	0	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0026	1965	1	1	0	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0027	1977	1	0	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0028	1931	1	0	0	0	0	1	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0029	1943	1	1	0	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0030	1967	1	0	1	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0031	1974	1	0	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0032	1970	1	0	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0033	1985	1	0	0	0	1	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0034	1983	1	0	1	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0035	1945	1	0	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0036	1943	1	0	1	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0037	1975	1	0	1	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0038	1971	1	0	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0039	1969	1	0	1	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0040	1974	1	0	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0041	1972	1	0	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0042	1967	1	0	0	0	0	1	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0043	1971	1	1	0	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0044	1931	1	0	0	0	0	1	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	t0045	1931	1	0	0	0	0	1	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A28_chr10_99605522_99625439	1/1	t0001	432	428	86	78	202	16	44	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	t0002	432	2	2	0	0	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	t0003	432	1	1	0	0	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	t0004	432	1	1	0	0	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A29_chr14_100286116_100311444	1/0	t0001	1380	220	57	33	101	8	20	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	t0002	1380	64	26	7	19	3	9	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	t0003	1380	62	3	15	35	3	6	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/1	t0004	1380	43	3	14	10	4	11	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	t0005	1380	5	5	0	0	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	t0006	1378	4	0	1	2	0	1	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	t0007	1378	3	0	0	3	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	t0008	1380	2	2	0	0	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	t0009	1380	1	1	0	0	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	t0010	1380	1	0	0	1	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	t0011	1380	1	0	0	0	0	1	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	t0012	1380	1	0	0	1	0	0	copy fasta	SLC25A29	chr14	100286116	100311444