JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A33_chr1_9534465_9590173	1/1	t0001	2900	178	30	42	69	7	28	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0002	2900	91	18	6	56	4	7	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0003	2900	11	8	1	0	0	2	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0004	2901	9	2	4	3	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0005	2898	7	0	2	5	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0006	2901	6	0	0	6	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0007	2898	6	6	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0008	2901	5	1	0	4	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0009	2900	5	5	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0010	2900	3	0	2	0	1	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0011	2900	3	3	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0012	2900	3	3	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0013	2876	2	0	2	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0014	2899	2	1	0	1	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0015	2900	2	1	1	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0016	2897	2	2	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0017	2898	2	0	0	2	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0018	2901	2	2	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0019	2900	1	0	0	0	0	1	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0020	2900	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0021	2900	1	0	0	1	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0022	2900	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0023	2900	1	0	0	1	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0024	2900	1	0	0	1	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0025	2900	1	0	0	0	0	1	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0026	2900	1	0	1	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0027	2935	1	0	0	0	0	1	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0028	2900	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0029	2900	1	0	0	1	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0030	2900	1	0	1	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0031	2900	1	0	0	1	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0032	2900	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0033	2900	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0034	2902	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0035	2900	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0036	2900	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0037	2900	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0038	2900	1	0	0	1	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0039	2900	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0040	2901	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	t0041	2898	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A34_chr1_15731258_15746392	1/1	t0001	2215	327	42	62	155	18	48	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0002	2216	12	12	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0003	2218	8	7	1	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0004	2218	8	7	1	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0005	2214	7	0	1	5	0	1	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0006	2214	6	0	4	2	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0007	2215	5	0	5	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0008	2217	5	4	1	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0009	2214	4	2	2	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392