JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A34_chr1_15731258_15746392	0/0	t0010	2215	4	4	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0011	2216	3	1	2	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0012	2217	3	2	1	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0013	2216	2	2	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0014	2214	2	2	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0015	2215	2	0	0	2	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0016	2215	2	2	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0017	2218	2	1	1	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0018	2217	1	1	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0019	2215	1	0	0	0	0	1	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0020	2215	1	0	1	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0021	2201	1	0	0	1	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0022	2215	1	0	0	1	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0023	2215	1	0	0	1	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0024	2215	1	0	0	1	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0025	2215	1	1	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0026	2215	1	1	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0027	2215	1	1	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0028	2215	1	0	0	1	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0029	2217	1	1	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0030	2217	1	1	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0031	2218	1	1	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0032	2218	1	1	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	t0033	2214	1	0	0	1	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A35_chr17_8285061_8300400	0/1	t0001	1038	105	29	23	34	9	9	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0002	1038	90	3	14	66	1	6	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0003	1038	42	14	3	24	1	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0004	1038	32	7	4	16	1	4	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	1/0	t0005	1038	31	0	3	24	0	3	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0006	1038	25	3	9	5	5	3	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0007	1038	14	9	0	5	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0008	1038	10	7	0	3	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0009	1038	10	2	8	0	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0010	1038	9	2	2	0	0	5	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0011	1038	9	5	4	0	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0012	1038	6	2	2	0	0	2	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0013	1038	6	4	0	1	1	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0014	1038	3	0	3	0	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0015	1038	2	2	0	0	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0016	1038	1	0	0	0	0	1	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0017	1038	1	0	1	0	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0018	1038	1	1	0	0	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0019	1038	1	0	0	0	0	1	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0020	1038	1	0	0	1	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	t0021	1038	1	0	0	1	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A36_chr3_140936836_140985995	0/1	t0001	4770	87	12	19	37	8	10	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0002	4763	40	5	1	31	0	3	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0003	4767	17	10	6	0	0	1	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0004	4771	13	5	1	6	0	1	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0005	4764	8	1	3	4	0	0	copy fasta	SLC25A36	chr3	140936836	140985995