Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL2L15_chr1_113871816_113892581	0/0	t0098	4514	1	0	0	1	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0099	4513	1	0	0	1	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L15_chr1_113871816_113892581	0/0	t0100	4514	1	0	1	0	0	0	copy fasta	BCL2L15	chr1	113871816	113892581
BCL2L1_chr20_31659458_31727868	1/1	t0001	1873	171	71	51	12	15	20	copy fasta	BCL2L1	chr20	31659458	31727868
BCL2L1_chr20_31659458_31727868	0/0	t0002	1873	6	6	0	0	0	0	copy fasta	BCL2L1	chr20	31659458	31727868
BCL2L1_chr20_31659458_31727868	0/0	t0003	1873	5	2	3	0	0	0	copy fasta	BCL2L1	chr20	31659458	31727868
BCL2L1_chr20_31659458_31727868	0/0	t0004	1873	2	2	0	0	0	0	copy fasta	BCL2L1	chr20	31659458	31727868
BCL2L1_chr20_31659458_31727868	0/0	t0005	1873	1	0	0	0	1	0	copy fasta	BCL2L1	chr20	31659458	31727868
BCL2L1_chr20_31659458_31727868	0/0	t0006	1873	1	1	0	0	0	0	copy fasta	BCL2L1	chr20	31659458	31727868
BCL2L2_chr14_23301833_23316751	0/1	t0001	2945	277	41	53	147	9	26	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0002	2945	49	29	5	13	1	1	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0003	2945	24	0	7	14	3	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0004	2945	17	5	4	5	0	3	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	1/0	t0005	2945	16	2	2	2	1	8	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0006	2945	8	0	6	0	2	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0007	2945	8	8	0	0	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0008	2945	6	6	0	0	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0009	2945	4	0	0	4	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0010	2945	4	4	0	0	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0011	2945	3	0	0	0	0	3	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0012	2945	3	0	0	3	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0013	2945	2	0	0	2	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0014	2945	1	0	0	1	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0015	2945	1	1	0	0	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0016	2945	1	0	1	0	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0017	2945	1	0	0	0	1	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0018	2945	1	0	0	1	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0019	2945	1	0	1	0	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0020	2945	1	0	0	1	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0021	2945	1	0	1	0	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0022	2945	1	0	0	0	1	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0023	2945	1	0	0	1	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0024	2945	1	1	0	0	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0025	2945	1	0	0	0	0	1	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2L2_chr14_23301833_23316751	0/0	t0026	2945	1	1	0	0	0	0	copy fasta	BCL2L2	chr14	23301833	23316751
BCL2_chr18_63118346_63324769	0/0	t0001	6163	58	16	14	17	2	9	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/1	t0002	6163	46	4	15	23	1	2	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0003	6162	27	7	4	10	2	4	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0004	6163	16	0	0	16	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0005	6162	10	9	0	0	0	1	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0006	6162	9	1	2	4	1	1	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0007	6161	8	4	4	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0008	6163	7	1	0	6	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0009	6163	6	0	2	0	1	3	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0010	6161	5	4	0	0	0	1	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0011	6161	4	0	4	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0012	6161	4	4	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0013	6162	3	2	1	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0014	6163	3	0	0	3	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0015	6162	2	0	2	0	0	0	copy fasta	BCL2	chr18	63118346	63324769