JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A36_chr3_140936836_140985995	0/0	t0056	4765	1	0	0	1	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0057	4770	1	0	0	0	1	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0058	4770	1	0	0	0	0	1	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0059	4771	1	0	0	1	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0060	4769	1	1	0	0	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0061	4770	1	1	0	0	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0062	4769	1	0	1	0	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0063	4770	1	1	0	0	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0064	4769	1	1	0	0	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0065	4771	1	1	0	0	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	t0066	4771	1	0	0	0	0	1	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A37_chr8_23523956_23580463	0/0	t0001	3624	74	2	14	42	5	11	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0002	3641	33	0	12	11	4	6	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0003	3646	24	6	2	12	0	4	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0004	3645	24	0	2	21	0	1	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/1	t0005	3652	16	0	1	14	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0006	3651	16	1	6	8	0	1	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0007	3656	15	4	4	4	0	3	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0008	3640	13	2	2	8	0	1	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0009	3653	10	1	1	8	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0010	3642	10	1	4	4	0	1	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0011	3639	8	8	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0012	3654	8	0	0	7	1	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0013	3650	8	0	5	2	0	1	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0014	3651	8	0	1	7	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0015	3651	7	6	0	0	0	1	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0016	3650	6	0	1	3	2	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0017	3657	5	0	2	2	0	1	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0018	3653	5	5	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0019	3652	5	4	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0020	3650	5	3	2	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0021	3652	5	0	0	5	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0022	3655	4	0	0	4	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0023	3648	4	4	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0024	3653	4	0	0	4	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0025	3638	3	2	1	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0026	3652	3	3	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0027	3649	3	3	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0028	3644	3	0	1	0	0	2	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0029	3642	3	1	2	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0030	3647	3	3	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0031	3645	2	2	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0032	3644	2	2	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0033	3656	2	2	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0034	3643	2	2	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0035	3637	2	2	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0036	3658	2	2	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0037	3646	2	0	2	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0038	3645	2	1	1	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0039	3641	2	0	2	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463