JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A37_chr8_23523956_23580463	0/0	t0040	3640	2	2	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0041	3659	2	0	0	2	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0042	3648	2	0	1	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0043	3645	2	1	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0044	3644	2	1	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0045	3639	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0046	3643	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0047	3640	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0048	3657	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0049	3657	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	1/0	t0050	3656	1	0	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0051	3654	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0052	3652	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0053	3651	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0054	3651	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0055	3646	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0056	3643	1	0	1	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0057	3641	1	0	1	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0058	3642	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0059	3641	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0060	3628	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0061	3624	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0062	3624	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0063	3624	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0064	3624	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0065	3624	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0066	3624	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0067	3655	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0068	3657	1	0	0	0	0	1	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0069	3657	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0070	3656	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0071	3652	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0072	3650	1	0	1	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0073	3649	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0074	3649	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0075	3647	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0076	3645	1	0	1	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0077	3644	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0078	3645	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0079	3641	1	0	1	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0080	3625	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0081	3658	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0082	3654	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0083	3644	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0084	3643	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0085	3636	1	0	0	1	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0086	3646	1	0	1	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	t0087	3645	1	0	1	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A38_chr3_39378370_39402351	1/1	t0001	1187	243	54	38	114	6	29	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	t0002	1186	108	8	24	61	5	10	copy fasta	SLC25A38	chr3	39378370	39402351