JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A38_chr3_39378370_39402351	0/0	t0003	1187	24	8	9	0	4	3	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	t0004	1187	15	12	3	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	t0005	1187	7	7	0	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	t0006	1187	4	0	0	4	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	t0007	1187	1	0	0	0	1	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	t0008	1187	1	0	1	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	t0009	1186	1	0	0	1	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	t0010	1187	1	0	1	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	t0011	1187	1	1	0	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	t0012	1187	1	1	0	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	t0013	1187	1	1	0	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A39_chr17_44314628_44329823	0/0	t0001	502	250	69	40	114	4	23	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	1/1	t0002	502	95	15	29	23	10	16	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	t0003	502	51	2	5	41	2	1	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	t0004	502	2	0	0	0	0	2	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A3_chr12_98588686_98611367	0/0	t0001	4897	81	6	32	31	4	8	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0002	4900	26	0	0	25	0	1	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0003	4897	19	0	0	19	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0004	4898	18	1	0	14	1	2	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0005	4890	17	0	6	9	1	1	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0006	4898	15	0	0	15	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0007	4901	13	3	2	3	0	5	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0008	4898	11	2	0	5	1	3	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0009	4897	11	1	2	6	0	2	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0010	4895	10	10	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0011	4898	10	2	4	0	1	3	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0012	4899	9	7	1	0	1	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0013	4897	9	3	3	1	0	2	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0014	4899	8	1	4	0	1	2	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0015	4898	7	0	0	7	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0016	4898	7	7	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0017	4891	7	0	0	7	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0018	4899	6	6	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0019	4897	6	0	1	1	2	2	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0020	4895	5	2	3	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0021	4901	5	0	0	5	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0022	4901	5	1	2	2	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0023	4899	5	0	0	5	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0024	4902	4	3	0	0	1	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0025	4898	3	0	0	2	0	1	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0026	4894	3	2	1	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0027	4890	3	0	1	2	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0028	4899	3	0	0	2	0	1	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0029	4897	3	0	0	3	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0030	4899	2	2	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0031	4900	2	1	1	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0032	4898	2	1	0	0	0	1	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0033	4899	2	0	2	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0034	4898	2	2	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0035	4892	2	2	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367