JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A3_chr12_98588686_98611367	0/0	t0086	4899	1	0	0	0	0	1	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/1	t0087	4897	1	0	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0088	4898	1	1	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0089	4890	1	0	0	1	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	1/0	t0090	4899	1	0	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0091	4914	1	1	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0092	4925	1	1	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0093	4899	1	0	1	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0094	4897	1	0	0	0	0	1	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0095	4897	1	0	0	1	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0096	4897	1	1	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0097	4898	1	0	0	0	1	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0098	4899	1	1	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0099	4899	1	1	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0100	4899	1	0	1	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0101	4898	1	1	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0102	4898	1	1	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0103	4897	1	0	0	1	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	t0104	4899	1	0	0	1	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A40_chr7_87828568_87881360	1/1	t0001	3040	144	35	39	47	6	15	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0002	3037	29	14	3	10	0	2	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0003	3040	26	6	12	4	1	3	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0004	3040	15	2	0	13	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0005	3040	5	5	0	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0006	3042	4	4	0	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0007	3040	3	0	0	3	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0008	3040	3	0	0	0	0	3	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0009	3037	2	0	0	2	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0010	3040	1	1	0	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0011	3040	1	0	0	1	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0012	3040	1	1	0	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0013	3040	1	1	0	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0014	3040	1	1	0	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0015	3040	1	0	0	1	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0016	3040	1	0	0	1	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0017	3040	1	1	0	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0018	3040	1	1	0	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0019	3040	1	0	0	0	0	1	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0020	3040	1	0	0	0	1	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0021	3040	1	1	0	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	t0022	3037	1	1	0	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A41_chr19_6421037_6438763	1/0	t0001	423	205	61	34	75	7	27	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/1	t0002	417	121	8	41	51	8	12	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	t0003	423	8	4	3	0	1	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	t0004	423	5	5	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	t0005	423	5	5	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	t0006	416	2	0	0	2	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	t0007	423	1	1	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	t0008	423	1	0	0	0	0	1	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	t0009	422	1	0	0	1	0	0	copy fasta	SLC25A41	chr19	6421037	6438763