JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SLC25A45_chr11_65370192_65387646	0/0	t0005	1394	10	9	1	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0006	1394	6	0	2	4	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0007	1394	4	4	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0008	1393	3	0	0	3	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0009	1392	3	0	1	1	0	1	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0010	1393	2	0	0	2	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0011	1393	2	2	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0012	1394	2	2	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0013	1395	1	0	0	1	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0014	1396	1	1	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0015	1394	1	1	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0016	1393	1	1	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0017	1394	1	1	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0018	1395	1	0	0	1	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0019	1395	1	1	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A45_chr11_65370192_65387646	0/0	t0020	1395	1	1	0	0	0	0	copy fasta	SLC25A45	chr11	65370192	65387646
SLC25A46_chr5_110734007_110770157	0/1	t0001	3489	147	17	34	68	8	19	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0002	3489	56	12	2	39	0	3	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0003	3489	41	9	2	24	2	4	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0004	3489	20	5	2	13	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	1/0	t0005	3489	19	1	4	12	0	1	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0006	3492	11	11	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0007	3489	10	0	0	9	0	1	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0008	3489	9	7	2	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0009	3489	9	1	4	0	3	1	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0010	3489	8	2	3	2	1	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0011	3489	8	0	7	1	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0012	3489	5	0	0	5	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0013	3489	3	2	1	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0014	3492	3	3	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0015	3489	3	3	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0016	3489	3	3	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0017	3489	3	0	0	3	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0018	3489	3	0	0	3	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0019	3489	2	0	0	2	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0020	3492	1	1	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0021	3489	1	1	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0022	3489	1	1	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0023	3492	1	1	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0024	3491	1	1	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0025	3489	1	1	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0026	3489	1	0	0	0	0	1	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0027	3489	1	1	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0028	3489	1	1	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0029	3489	1	1	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0030	3491	1	1	0	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0031	3489	1	0	0	1	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0032	3489	1	0	1	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0033	3489	1	0	0	1	0	0	copy fasta	SLC25A46	chr5	110734007	110770157
SLC25A46_chr5_110734007_110770157	0/0	t0034	3489	1	0	1	0	0	0	copy fasta	SLC25A46	chr5	110734007	110770157