Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACOT9_chrX_23696055_23748276	0/0	t0009	2973	10	2	3	5	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0010	2966	8	0	4	0	2	2	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0011	2971	7	3	0	4	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0012	2974	7	6	1	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0013	2966	6	4	1	0	1	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0014	2971	4	4	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0015	2975	3	3	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0016	2964	3	0	2	0	1	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0017	2966	3	2	1	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0018	2973	3	0	0	1	0	2	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0019	2964	3	0	0	3	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0020	2965	3	0	0	3	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0021	2973	2	2	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0022	2972	2	0	0	2	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0023	2966	2	0	0	2	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0024	2973	1	0	0	0	0	1	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0025	2972	1	0	0	0	0	1	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0026	2975	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0027	2974	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0028	2973	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0029	2968	1	0	0	0	1	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0030	2966	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0031	2964	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0032	2975	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0033	2972	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0034	2975	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0035	2972	1	0	1	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0036	2973	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0037	2971	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0038	2973	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0039	2971	1	0	1	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0040	2969	1	0	0	0	0	1	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0041	2975	1	0	1	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0042	2974	1	0	1	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0043	2972	1	0	1	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0044	2974	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0045	2971	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0046	2971	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0047	2965	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0048	2971	1	0	1	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0049	2963	1	0	0	0	0	1	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0050	2965	1	0	1	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0051	2965	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0052	2969	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0053	2971	1	0	0	0	0	1	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0054	2973	1	1	0	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	t0055	2971	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOX1_chr17_75936507_75984166	1/1	t0001	5335	115	8	29	54	7	15	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0002	5336	39	8	8	15	4	4	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	t0003	5332	29	9	4	12	0	4	copy fasta	ACOX1	chr17	75936507	75984166