Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BCL2_chr18_63118346_63324769	0/0	t0016	6163	2	0	0	2	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0017	6162	2	1	0	0	0	1	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0018	6161	2	2	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0019	6163	2	2	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0020	6162	2	2	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0021	6163	2	0	0	2	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0022	6163	2	2	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0023	6161	2	0	2	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	1/0	t0024	6162	2	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0025	6163	1	0	0	1	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0026	6162	1	0	0	0	1	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0027	6162	1	0	1	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0028	6163	1	0	0	1	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0029	6163	1	0	0	1	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0030	6162	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0031	6162	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0032	6163	1	0	0	1	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0033	6163	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0034	6163	1	0	0	0	0	1	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0035	6163	1	0	0	1	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0036	6163	1	0	1	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0037	6163	1	0	1	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0038	6162	1	0	1	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0039	6162	1	0	0	1	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0040	6161	1	0	1	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0041	6162	1	0	0	0	0	1	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0042	6162	1	0	1	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0043	6161	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0044	6163	1	0	1	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0045	6163	1	0	0	1	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0046	6162	1	0	0	1	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0047	6163	1	0	1	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0048	6163	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0049	6163	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0050	6163	1	0	1	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0051	6163	1	0	0	1	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0052	6163	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0053	6161	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0054	6161	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0055	6161	1	0	1	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0056	6161	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0057	6162	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0058	6162	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0059	6163	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0060	6161	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0061	6161	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL2_chr18_63118346_63324769	0/0	t0062	6163	1	1	0	0	0	0	copy fasta	BCL2	chr18	63118346	63324769
BCL3_chr19_44743708_44765044	1/0	t0001	513	118	14	32	41	12	18	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/1	t0002	514	106	14	28	48	3	12	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	t0003	510	44	31	4	5	0	4	copy fasta	BCL3	chr19	44743708	44765044